A | ProgAlignDualTiltSeries | |
addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
addKeywords(const char *keywords) | XmippProgram | |
addParamsLine(const String &line) | XmippProgram | |
addParamsLine(const char *line) | XmippProgram | |
addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
alignDual() | ProgAlignDualTiltSeries | |
alignment | ProgAlignDualTiltSeries | |
argc | XmippProgram | protected |
argv | XmippProgram | protected |
checkParam(const char *param) | XmippProgram | |
clearUsage() | XmippProgram | |
commonline | ProgAlignDualTiltSeries | |
commonlinei | ProgAlignDualTiltSeries | |
commonlinej | ProgAlignDualTiltSeries | |
commonlinejE | ProgAlignDualTiltSeries | |
debug | XmippProgram | |
debugging | ProgAlignDualTiltSeries | |
defaultComments | XmippProgram | protected |
defineCommons() | XmippProgram | protected |
defineParams() | ProgAlignDualTiltSeries | virtual |
distanceBetweenCommonLines(int refi, int dualj, const Matrix2D< double > &E, double X, double Y, double Z) | ProgAlignDualTiltSeries | |
doRun | XmippProgram | |
E | ProgAlignDualTiltSeries | |
endProgress() | XmippProgram | |
errorCode | XmippProgram | protected |
Et | ProgAlignDualTiltSeries | |
evaluateAlignment(const Matrix1D< double > &_alignment) | ProgAlignDualTiltSeries | |
existsParam(const char *param) | XmippProgram | |
findParametersAt0degrees(bool rotateDual) | ProgAlignDualTiltSeries | |
fnDual | ProgAlignDualTiltSeries | |
fnDual0 | ProgAlignDualTiltSeries | |
fnOut | ProgAlignDualTiltSeries | |
fnRef | ProgAlignDualTiltSeries | |
fnRef0 | ProgAlignDualTiltSeries | |
getCountParam(const char *param) | XmippProgram | |
getDoubleParam(const char *param, int arg=0) | XmippProgram | |
getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getFloatParam(const char *param, int arg=0) | XmippProgram | |
getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getIntParam(const char *param, int arg=0) | XmippProgram | |
getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getListParam(const char *param, StringVector &list) | XmippProgram | |
getParam(const char *param, int arg=0) | XmippProgram | |
getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
getParamDef(const char *param) const | XmippProgram | |
I | ProgAlignDualTiltSeries | |
imgDual | ProgAlignDualTiltSeries | |
imgRef | ProgAlignDualTiltSeries | |
initComments() | XmippProgram | virtual |
initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
name() const | XmippProgram | |
normali | ProgAlignDualTiltSeries | |
normalj | ProgAlignDualTiltSeries | |
optimizeAlignment() | ProgAlignDualTiltSeries | |
processDefaultComment(const char *param, const char *left) | XmippProgram | |
produceSideInfo() | ProgAlignDualTiltSeries | |
profilei | ProgAlignDualTiltSeries | |
profilej | ProgAlignDualTiltSeries | |
progDef | XmippProgram | protected |
quit(int exit_code=0) const | XmippProgram | virtual |
read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
read(const String &argumentsLine) | XmippProgram | |
readDual() | ProgAlignDualTiltSeries | |
readParams() | ProgAlignDualTiltSeries | virtual |
rotatedDual | ProgAlignDualTiltSeries | |
run() | ProgAlignDualTiltSeries | virtual |
runWithoutArgs | XmippProgram | |
scaleFactor | ProgAlignDualTiltSeries | |
setDefaultComment(const char *param, const char *comment) | XmippProgram | |
setProgramName(const char *name) | XmippProgram | |
setProgress(size_t value=0) | XmippProgram | |
SFDual | ProgAlignDualTiltSeries | |
SFRef | ProgAlignDualTiltSeries | |
shiftProjectionInZ(MultidimArray< double > &I, int dualj, double Z) const | ProgAlignDualTiltSeries | |
show() | ProgAlignDualTiltSeries | |
XmippProgram::show() const | XmippProgram | virtual |
tiltDual | ProgAlignDualTiltSeries | |
tiltRef | ProgAlignDualTiltSeries | |
tryRun() | XmippProgram | virtual |
usage(int verb=0) const | XmippProgram | virtual |
usage(const String ¶m, int verb=2) | XmippProgram | virtual |
verbose | XmippProgram | |
version() const | XmippProgram | |
Xdim | ProgAlignDualTiltSeries | |
XmippProgram() | XmippProgram | |
XmippProgram(int argc, const char **argv) | XmippProgram | |
Ydim | ProgAlignDualTiltSeries | |
~XmippProgram() | XmippProgram | virtual |