Xmipp  v3.23.11-Nereus
MpiProgMLF2D Member List

This is the complete list of members for MpiProgMLF2D, including all inherited members.

addExampleLine(const char *example, bool verbatim=true)XmippProgram
addKeywords(const char *keywords)XmippProgram
addParamsLine(const String &line)XmippProgram
addParamsLine(const char *line)XmippProgram
addPartialDocfileData(const MultidimArray< double > &data, size_t first, size_t last)ProgMLF2Dvirtual
addSeeAlsoLine(const char *seeAlso)XmippProgram
addUsageLine(const char *line, bool verbatim=false)XmippProgram
allowFastOptionML2DBaseProgram
allowIEMML2DBaseProgram
allowRestartML2DBaseProgram
allowThreadsML2DBaseProgram
alpha_kProgMLF2D
appendFTtoVector(const MultidimArray< std::complex< double > > &Fin, std::vector< double > &out)ProgMLF2D
argcXmippProgramprotected
argvXmippProgramprotected
average_scaleML2DBaseProgram
blocksML2DBaseProgram
C_fastML2DBaseProgram
calculateFourierOffsets(const MultidimArray< double > &Mimg, const std::vector< double > &offsets, std::vector< double > &out, MultidimArray< int > &Moffsets, MultidimArray< int > &Moffsets_mirror)ProgMLF2D
calculatePdfInplane()ProgMLF2D
checkConvergence()ML2DBaseProgramvirtual
checkParam(const char *param)XmippProgram
clearUsage()XmippProgram
clineML2DBaseProgram
convML2DBaseProgram
count_defocusProgMLF2D
created_nodeMpiML2DBase< MpiProgMLF2D >protected
createThreads()ML2DBasePrograminlinevirtual
current_blockML2DBaseProgram
current_highres_limitProgMLF2D
current_imageML2DBaseProgram
current_modelML2DBaseProgram
ddim2ML2DBaseProgram
debugXmippProgram
defaultCommentsXmippProgramprotected
defaultNiterML2DBaseProgram
defaultRootML2DBaseProgram
defaultStartingIterML2DBaseProgram
defineAdditionalParams(XmippProgram *prog, const char *sectionLine)ProgMLF2Dvirtual
defineBasicParams(XmippProgram *prog)ProgMLF2Dvirtual
defineCommons()XmippProgramprotected
defineHiddenParams(XmippProgram *prog)ML2DBaseProgramvirtual
defineParams()ProgMLF2Dvirtual
destroyThreads()ML2DBasePrograminlinevirtual
dfML2DBaseProgram
df2ML2DBaseProgram
dfsigma2ML2DBaseProgram
dimML2DBaseProgram
dim2ML2DBaseProgram
dnr_points_2dProgMLF2D
do_ctf_correctionProgMLF2D
do_divide_ctfProgMLF2D
do_generate_refsML2DBaseProgram
do_include_allfreqsProgMLF2D
do_kstestProgMLF2D
do_mirrorML2DBaseProgram
do_ML3DML2DBaseProgram
do_normML2DBaseProgram
do_restartML2DBaseProgram
do_studentProgMLF2D
do_student_sigma_trickProgMLF2D
do_variable_psiProgMLF2D
do_variable_transProgMLF2D
docfiledataML2DBaseProgram
doRunXmippProgram
endIteration()MpiProgMLF2Dvirtual
endProgress()XmippProgram
epsML2DBaseProgram
errorCodeXmippProgramprotected
estimateInitialNoiseSpectra()ProgMLF2D
existsParam(const char *param)XmippProgram
expectation()MpiProgMLF2Dvirtual
FML2DBaseProgram
factor_nrefML2DBaseProgram
fast_modeML2DBaseProgram
first_iter_noctfProgMLF2D
fix_fractionsML2DBaseProgram
fix_highProgMLF2D
fix_sigma_noiseML2DBaseProgram
fix_sigma_offsetML2DBaseProgram
fn_controlML2DBaseProgram
fn_docML2DBaseProgram
fn_fracML2DBaseProgram
fn_imgML2DBaseProgram
fn_oextML2DBaseProgram
fn_refML2DBaseProgram
fn_rootML2DBaseProgram
fn_scratchML2DBaseProgram
fn_sigML2DBaseProgram
fourierTranslate2D(const std::vector< double > &in, MultidimArray< double > &trans, std::vector< double > &out, int point_start=0)ProgMLF2D
FrefProgMLF2D
Fwsum_ctfimgsProgMLF2D
Fwsum_imgsProgMLF2D
generateInitialReferences()ProgMLF2D
getCountParam(const char *param)XmippProgram
getDoubleParam(const char *param, int arg=0)XmippProgram
getDoubleParam(const char *param, const char *subparam, int arg=0)XmippProgram
getFloatParam(const char *param, int arg=0)XmippProgram
getFloatParam(const char *param, const char *subparam, int arg=0)XmippProgram
getFTfromVector(const std::vector< double > &in, const int start_point, MultidimArray< std::complex< double > > &out, bool only_real=false)ProgMLF2D
getIntParam(const char *param, int arg=0)XmippProgram
getIntParam(const char *param, const char *subparam, int arg=0)XmippProgram
getListParam(const char *param, StringVector &list)XmippProgram
getParam(const char *param, int arg=0)XmippProgram
getParam(const char *param, const char *subparam, int arg=0)XmippProgram
getParamDef(const char *param) constXmippProgram
hdimML2DBaseProgram
highres_limitProgMLF2D
IctfProgMLF2D
img_idML2DBaseProgram
imgs_bgmeanML2DBaseProgram
imgs_offsetsML2DBaseProgram
imgs_oldphiML2DBaseProgram
imgs_oldthetaML2DBaseProgram
imgs_optrefnoML2DBaseProgram
imgs_scaleML2DBaseProgram
imgs_trymindiffML2DBaseProgram
ini_highres_limitProgMLF2D
initComments()XmippProgramvirtual
initProgress(size_t total, size_t stepBin=60)XmippProgram
initSamplingStuff()ML2DBaseProgram
IoldML2DBaseProgram
istartML2DBaseProgram
iterML2DBaseProgram
iter_write_histogramsProgMLF2D
iteration()ProgMLF2Dvirtual
limit_rotML2DBaseProgram
limit_transProgMLF2D
LLProgMLF2D
lowres_limitProgMLF2D
max_nr_psiProgMLF2D
maximization()ProgMLF2Dvirtual
MDimgML2DBaseProgram
MDlogML2DBaseProgram
MDrefML2DBaseProgram
mirror_fractionProgMLF2D
ML2DBaseProgram()ML2DBaseProgram
modelML2DBaseProgram
MpiML2DBase(MpiProgMLF2D *prm)MpiML2DBase< MpiProgMLF2D >
MpiML2DBase(MpiProgMLF2D *prm, MpiNode *node)MpiML2DBase< MpiProgMLF2D >
MpiML2DBase(const MpiML2DBase &)=deleteMpiML2DBase< MpiProgMLF2D >
MpiML2DBase(const MpiML2DBase &&)=deleteMpiML2DBase< MpiProgMLF2D >
MpiProgMLF2D()MpiProgMLF2D
MpiProgMLF2D(MpiNode *node)MpiProgMLF2D
Mr2ML2DBaseProgram
Mresol_intProgMLF2D
Mwsum_sigma2ProgMLF2D
myFirstImgML2DBaseProgram
myLastImgML2DBaseProgram
name() constXmippProgram
NiterML2DBaseProgram
nodeMpiML2DBase< MpiProgMLF2D >protected
nr_flipML2DBaseProgram
nr_focusProgMLF2D
nr_images_globalML2DBaseProgram
nr_images_localML2DBaseProgram
nr_nomirror_flipsML2DBaseProgram
nr_points_2dProgMLF2D
nr_points_probProgMLF2D
nr_psiML2DBaseProgram
nr_transProgMLF2D
nr_volsProgMLF2D
offsets_keepdirProgMLF2D
operator=(const MpiML2DBase &)=deleteMpiML2DBase< MpiProgMLF2D >
operator=(const MpiML2DBase &&)=deleteMpiML2DBase< MpiProgMLF2D >
outRefsMdML2DBaseProgram
P_phiML2DBaseProgram
performKSTest(MultidimArray< double > &Mimg, const int focus, bool apply_ctf, FileName &fn_img, bool write_histogram, std::vector< std::vector< MultidimArray< std::complex< double > > > > &Fref, double &opt_scale, int &opt_refno, int &opt_ipsi, int &opt_iflip, MultidimArray< double > &opt_offsets)ProgMLF2D
phase_flippedProgMLF2D
pointer_2dProgMLF2D
pointer_iProgMLF2D
pointer_jProgMLF2D
preselect_significant_model_phi(MultidimArray< double > &Mimg, std::vector< double > &offsets, std::vector< std::vector< MultidimArray< double > > > &Mref, MultidimArray< int > &Msignificant, std::vector< double > &pdf_directions)ProgMLF2D
preselectDirections(float &phi, float &theta, std::vector< double > &pdf_directions)ProgMLF2D
processDefaultComment(const char *param, const char *left)XmippProgram
processOneImage(const MultidimArray< double > &Mimg, size_t focus, bool apply_ctf, double &fracweight, double &maxweight2, double &sum_refw2, double &opt_scale, size_t &opt_refno, double &opt_psi, size_t &opt_ipsi, size_t &opt_iflip, MultidimArray< double > &opt_offsets, std::vector< double > &opt_offsets_ref, std::vector< double > &pdf_directions, bool do_kstest, bool write_histograms, FileName fn_img, double &KSprob)ProgMLF2D
produceSideInfo()MpiProgMLF2Dvirtual
produceSideInfo2()MpiProgMLF2Dvirtual
progDefXmippProgramprotected
ProgMLF2D(int nr_vols=0, int rank=0, int size=1)ProgMLF2D
programMpiML2DBase< MpiProgMLF2D >protected
psi_maxML2DBaseProgram
psi_stepML2DBaseProgram
quit(int exit_code=0) constXmippProgramvirtual
randomizeImagesOrder()ML2DBaseProgramvirtual
rankProgMLF2D
read(int argc, const char **argv, bool reportErrors=true)XmippProgramvirtual
read(int argc, char **argv, bool reportErrors=true)XmippProgramvirtual
read(const String &argumentsLine)XmippProgram
readMpi(int argc, char **argv)MpiML2DBase< MpiProgMLF2D >inline
readParams()ProgMLF2Dvirtual
reduce_snrProgMLF2D
referenceExclusiveML2DBaseProgram
refs_avgscaleProgMLF2D
refs_per_classML2DBaseProgram
resolhistProgMLF2D
reverseRotateReference(const std::vector< double > &in, std::vector< MultidimArray< double > > &out)ProgMLF2D
rotateReference(std::vector< double > &out)ProgMLF2D
run()ML2DBaseProgramvirtual
runWithoutArgsXmippProgram
samplingProgMLF2D
save_mem1ML2DBaseProgram
save_mem2ML2DBaseProgram
save_mem3ML2DBaseProgram
search_rotML2DBaseProgram
search_shiftProgMLF2D
seedML2DBaseProgram
sendDocfile(const MultidimArray< double > &data)MpiML2DBase< MpiProgMLF2D >
setCurrentSamplingRates(double current_probres_limit)ProgMLF2D
setDefaultComment(const char *param, const char *comment)XmippProgram
setNumberOfLocalImages()ML2DBaseProgramvirtual
setProgramName(const char *name)XmippProgram
setProgress(size_t value=0)XmippProgram
show(bool ML3D=false)ProgMLF2D
ML2DBaseProgram::show() constXmippProgramvirtual
sigma_offsetProgMLF2D
sizeProgMLF2D
spectral_signalML2DBaseProgram
sumcorrProgMLF2D
sumhistProgMLF2D
sumwProgMLF2D
sumw2ProgMLF2D
sumw_allrefsProgMLF2D
sumw_defocusProgMLF2D
sumw_mirrorProgMLF2D
sumwscProgMLF2D
sumwsc2ProgMLF2D
threadsML2DBaseProgram
trymindiff_factorML2DBaseProgram
tryRun()XmippProgramvirtual
updateWienerFilters(const MultidimArray< double > &spectral_signal, std::vector< double > &sumw_defocus, int iter)ProgMLF2D
usage(int verb=0) constXmippProgramvirtual
usage(const String &param, int verb=2)XmippProgramvirtual
VctfProgMLF2D
VdecProgMLF2D
verboseXmippProgram
version() constXmippProgram
VsigProgMLF2D
VtransML2DBaseProgram
writeNoiseFile(const FileName &fn_base, int ifocus)ProgMLF2D
writeOutputFiles(const ModelML2D &model, OutputType outputType=OUT_FINAL)MpiProgMLF2Dvirtual
wsum_ctfMrefProgMLF2D
wsum_MrefProgMLF2D
wsum_sigma_offsetProgMLF2D
XmippProgram()XmippProgram
XmippProgram(int argc, const char **argv)XmippProgram
zero_offsetsML2DBaseProgram
zero_transProgMLF2D
~MpiML2DBase()MpiML2DBase< MpiProgMLF2D >inline
~XmippProgram()XmippProgramvirtual
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