| addExampleLine(const char *example, bool verbatim=true) | XmippProgram | |
| addKeywords(const char *keywords) | XmippProgram | |
| addParamsLine(const String &line) | XmippProgram | |
| addParamsLine(const char *line) | XmippProgram | |
| addSeeAlsoLine(const char *seeAlso) | XmippProgram | |
| addUsageLine(const char *line, bool verbatim=false) | XmippProgram | |
| applyWienerFilter(MultidimArray< double > &img) | MpiProgAngularClassAverage | |
| argc | XmippProgram | protected |
| argv | XmippProgram | protected |
| checkParam(const char *param) | XmippProgram | |
| clearUsage() | XmippProgram | |
| col_select | MpiProgAngularClassAverage | |
| corr | MpiProgAngularClassAverage | |
| createJobList() | MpiProgAngularClassAverage | |
| ctfNum | MpiProgAngularClassAverage | |
| debug | XmippProgram | |
| defaultComments | XmippProgram | protected |
| defineCommons() | XmippProgram | protected |
| defineParams() | MpiProgAngularClassAverage | virtual |
| DF | MpiProgAngularClassAverage | |
| DFclassesExp | MpiProgAngularClassAverage | |
| DFlib | MpiProgAngularClassAverage | |
| DFscore | MpiProgAngularClassAverage | |
| do_add | MpiProgAngularClassAverage | |
| do_limit0 | MpiProgAngularClassAverage | |
| do_limitF | MpiProgAngularClassAverage | |
| do_limitR0class | MpiProgAngularClassAverage | |
| do_limitR0per | MpiProgAngularClassAverage | |
| do_limitRFclass | MpiProgAngularClassAverage | |
| do_limitRFper | MpiProgAngularClassAverage | |
| do_mirrors | MpiProgAngularClassAverage | |
| do_pcaSorting | MpiProgAngularClassAverage | |
| do_save_images_assigned_to_classes | MpiProgAngularClassAverage | |
| do_split | MpiProgAngularClassAverage | |
| doRun | XmippProgram | |
| endProgress() | XmippProgram | |
| eps | MpiProgAngularClassAverage | |
| errorCode | XmippProgram | protected |
| existsParam(const char *param) | XmippProgram | |
| filterInputMetadata() | MpiProgAngularClassAverage | |
| fn_out | MpiProgAngularClassAverage | |
| fn_out1 | MpiProgAngularClassAverage | |
| fn_out2 | MpiProgAngularClassAverage | |
| fn_ref | MpiProgAngularClassAverage | |
| fn_wien | MpiProgAngularClassAverage | |
| getCountParam(const char *param) | XmippProgram | |
| getDoubleParam(const char *param, int arg=0) | XmippProgram | |
| getDoubleParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, int arg=0) | XmippProgram | |
| getFloatParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getIntParam(const char *param, int arg=0) | XmippProgram | |
| getIntParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getListParam(const char *param, StringVector &list) | XmippProgram | |
| getParam(const char *param, int arg=0) | XmippProgram | |
| getParam(const char *param, const char *subparam, int arg=0) | XmippProgram | |
| getParamDef(const char *param) const | XmippProgram | |
| getPolar(MultidimArray< double > &img, Polar< std::complex< double > > &fP, bool conjugated=false, float xoff=0., float yoff=0.) | MpiProgAngularClassAverage | |
| global_plans | MpiProgAngularClassAverage | |
| Iempty | MpiProgAngularClassAverage | |
| inFile | MpiProgAngularClassAverage | |
| initComments() | XmippProgram | virtual |
| initDimentions() | MpiProgAngularClassAverage | |
| initFileNames() | MpiProgAngularClassAverage | |
| initOutputFiles() | MpiProgAngularClassAverage | |
| initProgress(size_t total, size_t stepBin=60) | XmippProgram | |
| initWeights() | MpiProgAngularClassAverage | |
| limit0 | MpiProgAngularClassAverage | |
| limitF | MpiProgAngularClassAverage | |
| limitRclass | MpiProgAngularClassAverage | |
| limitRper | MpiProgAngularClassAverage | |
| lockArray | MpiProgAngularClassAverage | |
| master_seed | MpiProgAngularClassAverage | |
| max_psi_change | MpiProgAngularClassAverage | |
| max_shift | MpiProgAngularClassAverage | |
| max_shift_change | MpiProgAngularClassAverage | |
| mdJobList | MpiProgAngularClassAverage | |
| mpi_job_size | MpiProgAngularClassAverage | |
| mpi_postprocess() | MpiProgAngularClassAverage | |
| mpi_preprocess() | MpiProgAngularClassAverage | |
| mpi_process(double *Def_3Dref_2Dref_JobNo) | MpiProgAngularClassAverage | |
| mpi_process_loop(double *Def_3Dref_2Dref_JobNo) | MpiProgAngularClassAverage | |
| mpi_produceSideInfo() | MpiProgAngularClassAverage | |
| mpi_write(size_t dirno, int ref3dIndex, Image< double > avg, Image< double > avg1, Image< double > avg2, double w1, double w2, double old_w, double old_w1, double old_w2) | MpiProgAngularClassAverage | |
| mpi_writeController(size_t dirno, Image< double > avg, Image< double > avg1, Image< double > avg2, const MetaDataDb &SFclass, const MetaDataDb &SFclass1, const MetaDataDb &SFclass2, const MetaDataDb &SFclassDiscarded, const MetaDataDb &_DF, double w1, double w2, double w, int lockIndex) | MpiProgAngularClassAverage | |
| mpi_writeFile(Image< double > avg, size_t dirno, FileName fileNameStk, double w_old) | MpiProgAngularClassAverage | |
| MpiProgAngularClassAverage() | MpiProgAngularClassAverage | |
| MpiProgAngularClassAverage(int argc, char **argv) | MpiProgAngularClassAverage | |
| Mwien | MpiProgAngularClassAverage | |
| name() const | XmippProgram | |
| Ndim | MpiProgAngularClassAverage | |
| node | XmippMpiProgram | protected |
| nProcs | XmippMpiProgram | protected |
| nr_iter | MpiProgAngularClassAverage | |
| numberOfJobs | XmippMpiProgram | protected |
| pad | MpiProgAngularClassAverage | |
| paddim | MpiProgAngularClassAverage | |
| processDefaultComment(const char *param, const char *left) | XmippProgram | |
| progDef | XmippProgram | protected |
| quit(int exit_code=0) const | XmippProgram | virtual |
| read(int argc, char **argv) | XmippMpiProgram | |
| XmippProgram::read(int argc, const char **argv, bool reportErrors=true) | XmippProgram | virtual |
| XmippProgram::read(int argc, char **argv, bool reportErrors=true) | XmippProgram | virtual |
| XmippProgram::read(const String &argumentsLine) | XmippProgram | |
| readParams() | MpiProgAngularClassAverage | virtual |
| reAlignClass(Image< double > &avg1, Image< double > &avg2, MetaData &SFclass1, MetaData &SFclass2, std::vector< Image< double > > imgs, std::vector< int > splits, std::vector< int > numbers, size_t dirno, double *my_output) | MpiProgAngularClassAverage | |
| ref3dNum | MpiProgAngularClassAverage | |
| refGroup | MpiProgAngularClassAverage | |
| Ri | MpiProgAngularClassAverage | |
| Ro | MpiProgAngularClassAverage | |
| rotAux | MpiProgAngularClassAverage | |
| run() | MpiProgAngularClassAverage | virtual |
| runWithoutArgs | XmippProgram | |
| saveDiscardedImages() | MpiProgAngularClassAverage | |
| setDefaultComment(const char *param, const char *comment) | XmippProgram | |
| setNode(const std::shared_ptr< MpiNode > &node) | XmippMpiProgram | protected |
| setProgramName(const char *name) | XmippProgram | |
| setProgress(size_t value=0) | XmippProgram | |
| SFclasses | MpiProgAngularClassAverage | |
| SFclasses1 | MpiProgAngularClassAverage | |
| SFclasses2 | MpiProgAngularClassAverage | |
| show() const | XmippProgram | virtual |
| status | XmippMpiProgram | protected |
| tryRun() | XmippMpiProgram | virtual |
| usage(int verb=0) const | XmippProgram | virtual |
| usage(const String ¶m, int verb=2) | XmippProgram | virtual |
| verbose | XmippProgram | |
| version() const | XmippProgram | |
| weightArray | MpiProgAngularClassAverage | |
| weightArrays1 | MpiProgAngularClassAverage | |
| weightArrays2 | MpiProgAngularClassAverage | |
| Xdim | MpiProgAngularClassAverage | |
| XmippProgram() | XmippProgram | |
| XmippProgram(int argc, const char **argv) | XmippProgram | |
| Ydim | MpiProgAngularClassAverage | |
| Zdim | MpiProgAngularClassAverage | |
| ~XmippProgram() | XmippProgram | virtual |
1.8.13