AutoParticlePicking2 Member List

This is the complete list of members for AutoParticlePicking2, including all inherited members.

accepted_particles	AutoParticlePicking2
add2Dataset(int flagNegPos)	AutoParticlePicking2
add2Dataset(const MetaData &removedParticlesMD)	AutoParticlePicking2
add2Dataset(const FileName &fnInvariantFeat, const FileName &fnParticles, int lable)	AutoParticlePicking2
add2Dataset()	AutoParticlePicking2
applyConvolution(bool fast)	AutoParticlePicking2
auto_candidates	AutoParticlePicking2
autoFeatVec	AutoParticlePicking2
automaticallySelectParticles(FileName fnmicrograph, int proc_prec, std::vector< MDRowSql > &md)	AutoParticlePicking2
automaticWithouThread(FileName fnmicrograph, int proc_prec, const FileName &fn)	AutoParticlePicking2
AutoParticlePicking2(int particle_size, int filter_num=6, int corr_num=2, int NPCA=4, const FileName &model_name=nullptr, const std::vector< MDRowSql > &vMicList={})	AutoParticlePicking2
AutoParticlePicking2()=default	AutoParticlePicking2
batchBuildInvariant(const std::vector< MDRowSql > &MD)	AutoParticlePicking2
buildInvariant(const std::vector< MDRowSql > &MD)	AutoParticlePicking2
buildInvariant(MultidimArray< double > &invariantChannel, int x, int y, int pre)	AutoParticlePicking2
buildSearchSpace(std::vector< Particle2 > &positionArray, bool fast)	AutoParticlePicking2
buildVector(MultidimArray< double > &inputVec, MultidimArray< double > &staticVec, MultidimArray< double > &featureVec, MultidimArray< double > &pieceImage)	AutoParticlePicking2
checkDist(Particle2 &p)	AutoParticlePicking2
classifier	AutoParticlePicking2
classifier2	AutoParticlePicking2
classLabel	AutoParticlePicking2
classLabel1	AutoParticlePicking2
convert2PolarFourier(MultidimArray< double > &particleImage, MultidimArray< std::complex< double > > &polar)	AutoParticlePicking2
convolveRes	AutoParticlePicking2
corr_num	AutoParticlePicking2
correction(const std::vector< MDRowSql > &addedParticlesMD, const std::vector< MDRowSql > &removedParticlesMD)	AutoParticlePicking2
dataSet	AutoParticlePicking2
dataSet1	AutoParticlePicking2
dataSetNormal	AutoParticlePicking2
defineParams(XmippProgram *program)	AutoParticlePicking2	static
extractInvariant()	AutoParticlePicking2
extractInvariant(const FileName &fnInvariantFeat, const FileName &fnParticles, bool avgFlag)	AutoParticlePicking2
extractNegativeInvariant()	AutoParticlePicking2
extractNegativeInvariant(const FileName &fnInvariantFeat, const FileName &fnParticles)	AutoParticlePicking2
extractNonParticle(std::vector< Particle2 > &negativePosition)	AutoParticlePicking2
extractParticle(const int x, const int y, MultidimArray< double > &filter, MultidimArray< double > &particleImage, bool normal)	AutoParticlePicking2
extractPositiveInvariant()	AutoParticlePicking2
extractPositiveInvariant(const FileName &fnInvariantFeat, const FileName &fnParticles, bool avgFlag)	AutoParticlePicking2
extractStatics(MultidimArray< double > &inputVec, MultidimArray< double > &features)	AutoParticlePicking2
fast	AutoParticlePicking2
filter_num	AutoParticlePicking2
filterBankGenerator()	AutoParticlePicking2
filterBankStack	AutoParticlePicking2
fn_micrograph	AutoParticlePicking2
fn_model	AutoParticlePicking2
fnAvgModel	AutoParticlePicking2
fnInvariant	AutoParticlePicking2
fnParticles	AutoParticlePicking2
fnPCAModel	AutoParticlePicking2
fnPCARotModel	AutoParticlePicking2
fnSVMModel	AutoParticlePicking2
fnSVMModel2	AutoParticlePicking2
fnVector	AutoParticlePicking2
generateFeatVec(const FileName &fnmicrograph, int proc_prec, std::vector< Particle2 > &positionArray)	AutoParticlePicking2
generateTrainSet()	AutoParticlePicking2
getParticlesThreshold()	AutoParticlePicking2
labelSet	AutoParticlePicking2
loadTrainingSet(const FileName &fn_root)	AutoParticlePicking2
m	AutoParticlePicking2
micList	AutoParticlePicking2
micrographStack	AutoParticlePicking2
micrographStackPre	AutoParticlePicking2
microImage	AutoParticlePicking2
microImagePrev	AutoParticlePicking2
mPrev	AutoParticlePicking2
NangSteps	AutoParticlePicking2	static
negative_candidates	AutoParticlePicking2
negativeInvariatnStack	AutoParticlePicking2
negativeParticleStack	AutoParticlePicking2
normalizeDataset(int a, int b)	AutoParticlePicking2
NPCA	AutoParticlePicking2
NRPCA	AutoParticlePicking2
NRsteps	AutoParticlePicking2
Nthreads	AutoParticlePicking2
num_correlation	AutoParticlePicking2
num_features	AutoParticlePicking2
p1	AutoParticlePicking2
p2	AutoParticlePicking2
particle_radius	AutoParticlePicking2
particle_size	AutoParticlePicking2
particleAvg	AutoParticlePicking2
pcaAnalyzer	AutoParticlePicking2
pcaModel	AutoParticlePicking2
PCAProject(MultidimArray< double > &pcaBasis, MultidimArray< double > &vec)	AutoParticlePicking2
pcaRotModel	AutoParticlePicking2
polarCorrelation(const MultidimArray< std::complex< double > > &fourierPolarStack, MultidimArray< double > &IpolarCorr)	AutoParticlePicking2
positiveInvariatnStack	AutoParticlePicking2
positiveParticleStack	AutoParticlePicking2
proc_prec	AutoParticlePicking2
readMic(const FileName &fn_micrograph, int keepPrev)	AutoParticlePicking2
readMicrograph()	AutoParticlePicking2
readNextMic(FileName &fnmicrograph)	AutoParticlePicking2
readParams(XmippProgram *program)	AutoParticlePicking2
rejected_particles	AutoParticlePicking2
rotPcaAnalyzer	AutoParticlePicking2
saveAutoParticles(MetaData &md)	AutoParticlePicking2
saveAutoParticles(std::vector< MDRowSql > &md)	AutoParticlePicking2
savePCAModel(const FileName &fn)	AutoParticlePicking2
saveTrainingSet()	AutoParticlePicking2
saveTrainingSet(const FileName &fn_root)	AutoParticlePicking2
scaleRate	AutoParticlePicking2
setSize(int pSize)	AutoParticlePicking2
thread	AutoParticlePicking2
train(const std::vector< MDRowSql > &MD, bool corrFlag, int x, int y, int width, int height)	AutoParticlePicking2
trainPCA()	AutoParticlePicking2
trainPCA(const FileName &fnPositiveFeat)	AutoParticlePicking2
trainRotPCA(const FileName &fnAvgModel, const FileName &fnPCARotModel)	AutoParticlePicking2
trainSVM(const FileName &fnModel, int numClassifier)	AutoParticlePicking2
~AutoParticlePicking2()	AutoParticlePicking2